IL_8RPZ_013

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_013 not in the Motif Atlas

Homologous match to IL_5J7L_257

Geometric discrepancy: 0.0835

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8RPZ|1|A|C|564
8RPZ|1|A|C|565
8RPZ|1|A|U|566
*
8RPZ|1|A|A|575
8RPZ|1|A|U|576
8RPZ|1|A|G|577

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21