IL_8RPZ_107
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 8RPZ|1|A|U|2689, 8RPZ|1|A|U|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RPZ_107 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.0786
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8RPZ|1|A|U|2687
8RPZ|1|A|G|2688
8RPZ|1|A|U|2689
8RPZ|1|A|U|2690
8RPZ|1|A|C|2691
*
8RPZ|1|A|G|2718
8RPZ|1|A|G|2719
8RPZ|1|A|U|2720
8RPZ|1|A|A|2721
8RPZ|1|A|G|2722
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain N
- Large ribosomal subunit protein bL17
- Chain P
- Large ribosomal subunit protein bL19
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