IL_8RQ0_070
3D structure
- PDB id
- 8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 8RQ0|1|A|A|1801, 8RQ0|1|A|C|1816, 8RQ0|1|A|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RQ0_070 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.0627
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8RQ0|1|A|U|1798
8RQ0|1|A|G|1799
8RQ0|1|A|C|1800
8RQ0|1|A|A|1801
8RQ0|1|A|A|1802
8RQ0|1|A|A|1803
8RQ0|1|A|C|1804
*
8RQ0|1|A|G|1813
8RQ0|1|A|G|1814
8RQ0|1|A|A|1815
8RQ0|1|A|C|1816
8RQ0|1|A|G|1817
8RQ0|1|A|U|1818
8RQ0|1|A|A|1819
8RQ0|1|A|U|1820
8RQ0|1|A|A|1821
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
Coloring options: