IL_8RQ2_070

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8RQ2|1|A|A|1801, 8RQ2|1|A|C|1816, 8RQ2|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ2_070 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0627

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8RQ2|1|A|U|1798
8RQ2|1|A|G|1799
8RQ2|1|A|C|1800
8RQ2|1|A|A|1801
8RQ2|1|A|A|1802
8RQ2|1|A|A|1803
8RQ2|1|A|C|1804
*
8RQ2|1|A|G|1813
8RQ2|1|A|G|1814
8RQ2|1|A|A|1815
8RQ2|1|A|C|1816
8RQ2|1|A|G|1817
8RQ2|1|A|U|1818
8RQ2|1|A|A|1819
8RQ2|1|A|U|1820
8RQ2|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2