IL_8RRI_015
3D structure
- PDB id
- 8RRI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with antibiotic tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8RRI|1|A|A|2146
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RRI_015 not in the Motif Atlas
- Homologous match to IL_5J7L_276
- Geometric discrepancy: 0.1645
- The information below is about IL_5J7L_276
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
8RRI|1|A|G|2145
8RRI|1|A|A|2146
8RRI|1|A|G|2147
*
8RRI|1|A|C|2254
8RRI|1|A|C|2255
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain b
- 39S ribosomal protein L43, mitochondrial
- Chain j
- 39S ribosomal protein L52, mitochondrial
Coloring options: