IL_8RRI_058

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UACAC*GUGA

Length

9 nucleotides

Bulged bases

8RRI|1|AA|A|691, 8RRI|1|AA|A|693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_058 not in the Motif Atlas

Geometric match to IL_413D_001

Geometric discrepancy: 0.3802

The information below is about IL_413D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8RRI|1|AA|U|690
8RRI|1|AA|A|691
8RRI|1|AA|C|692
8RRI|1|AA|A|693
8RRI|1|AA|C|694
*
8RRI|1|AA|G|820
8RRI|1|AA|U|821
8RRI|1|AA|G|822
8RRI|1|AA|A|823

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains