IL_8RXH_004

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GU*AUUC

Length

6 nucleotides

Bulged bases

8RXH|1|L7|U|157, 8RXH|1|L7|U|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_004 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1658

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8RXH|1|L1|G|11
8RXH|1|L1|U|12
*
8RXH|1|L7|A|156
8RXH|1|L7|U|157
8RXH|1|L7|U|158
8RXH|1|L7|C|159

Current chains

Chain L1

LSUa_rRNA_chain_1

Chain L7

5.8S_rRNA_chain_7

Nearby chains

Chain LM

Ribosomal protein L15

Chain LV

Putative 60S ribosomal protein L23a