IL_8RXH_012

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGUUG*CUC

Length

8 nucleotides

Bulged bases

8RXH|1|L1|G|169, 8RXH|1|L1|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_012 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.1981

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8RXH|1|L1|G|168
8RXH|1|L1|G|169
8RXH|1|L1|U|170
8RXH|1|L1|U|171
8RXH|1|L1|G|172
*
8RXH|1|L1|C|285
8RXH|1|L1|U|286
8RXH|1|L1|C|287

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LI

Putative 60S ribosomal protein L13

Chain La

Putative 60S ribosomal protein L35