IL_8RXH_022

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

U(PSU)U*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_022 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1529

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8RXH|1|L1|U|421
8RXH|1|L1|PSU|422
8RXH|1|L1|U|423
*
8RXH|1|L1|A|428
8RXH|1|L1|G|429
8RXH|1|L1|A|430

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LT

Putative 60S ribosomal protein L17