IL_8RXH_024

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GAAG*CCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_024 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.1745

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8RXH|1|L1|G|468
8RXH|1|L1|A|469
8RXH|1|L1|A|470
8RXH|1|L1|G|471
*
8RXH|1|L1|C|662
8RXH|1|L1|C|663
8RXH|1|L1|C|664
8RXH|1|L1|C|665

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain LH

Putative 60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L32

Chain Lg

Putative ribosomal protein l35a