IL_8RXH_033

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CCU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_033 not in the Motif Atlas

Geometric match to IL_4KQ0_002

Geometric discrepancy: 0.139

The information below is about IL_4KQ0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8RXH|1|L1|C|513
8RXH|1|L1|C|514
8RXH|1|L1|U|515
*
8RXH|1|L1|G|536
8RXH|1|L1|G|537
8RXH|1|L1|G|538

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LC

Putative ribosomal protein L1a

Chain LK

Putative 40S ribosomal protein L14

Chain LR

60S ribosomal protein L18a