IL_8RXH_046

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UGCAC*GCCCAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_046 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3181

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RXH|1|L1|U|776
8RXH|1|L1|G|777
8RXH|1|L1|C|778
8RXH|1|L1|A|779
8RXH|1|L1|C|780
*
8RXH|1|L1|G|801
8RXH|1|L1|C|802
8RXH|1|L1|C|803
8RXH|1|L1|C|804
8RXH|1|L1|A|805
8RXH|1|L1|A|806

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LP

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29