IL_8RXH_053

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_053 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0949

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8RXH|1|L1|U|885
8RXH|1|L1|G|886
8RXH|1|L1|A|887
8RXH|1|L1|A|888
8RXH|1|L1|G|889
*
8RXH|1|L1|U|906
8RXH|1|L1|G|907
8RXH|1|L1|G|908
8RXH|1|L1|A|909
8RXH|1|L1|G|910

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain L3

SR1_chain_3

Chain LA

Putative 60S ribosomal protein L2

Chain LQ

Putative 60S ribosomal protein L19

Chain Lo

60S ribosomal protein L37a