IL_8RXH_066
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GCAAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8RXH|1|L1|A|1052
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_066 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1054
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8RXH|1|L1|G|1050
8RXH|1|L1|C|1051
8RXH|1|L1|A|1052
8RXH|1|L1|A|1053
8RXH|1|L1|A|1054
8RXH|1|L1|U|1055
*
8RXH|1|L1|A|1097
8RXH|1|L1|A|1098
8RXH|1|L1|A|1099
8RXH|1|L1|C|1100
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L8
- 5S ribosomal RNA; 5S rRNA
- Chain LN
- Putative 60S ribosomal protein L10
- Chain LO
- Putative 60S ribosomal protein L5
- Chain LS
- Putative 60S ribosomal protein L21
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