IL_8RXH_078
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GAUACGUGAAAAG*CGAAAAUGGA(OMU)G(A2M)CGC
- Length
- 29 nucleotides
- Bulged bases
- 8RXH|1|L1|U|1257||A, 8RXH|1|L1|U|1261, 8RXH|1|L1|A|1364, 8RXH|1|L1|U|1367, 8RXH|1|L1|G|1372
- QA status
- Modified nucleotides: OMU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_078 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2179
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|L1|G|1255
8RXH|1|L1|A|1256
8RXH|1|L1|U|1257||A
8RXH|1|L1|A|1258
8RXH|1|L1|C|1259
8RXH|1|L1|G|1260
8RXH|1|L1|U|1261
8RXH|1|L1|G|1262
8RXH|1|L1|A|1263
8RXH|1|L1|A|1264
8RXH|1|L1|A|1265
8RXH|1|L1|A|1266
8RXH|1|L1|G|1267
*
8RXH|1|L1|C|1361
8RXH|1|L1|G|1362
8RXH|1|L1|A|1363
8RXH|1|L1|A|1364
8RXH|1|L1|A|1365
8RXH|1|L1|A|1366
8RXH|1|L1|U|1367
8RXH|1|L1|G|1368
8RXH|1|L1|G|1369
8RXH|1|L1|A|1370
8RXH|1|L1|OMU|1371
8RXH|1|L1|G|1372
8RXH|1|L1|A2M|1373
8RXH|1|L1|C|1374
8RXH|1|L1|G|1375
8RXH|1|L1|C|1376
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L8
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- Putative ribosomal protein L3
- Chain LH
- Putative 60S ribosomal protein L13a
- Chain LN
- Putative 60S ribosomal protein L10
- Chain LR
- 60S ribosomal protein L18a
- Chain Lc
- Putative 60S ribosomal protein L7
- Chain Lg
- Putative ribosomal protein l35a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
Coloring options: