IL_8RXH_080

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_080 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1076

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8RXH|1|L1|G|1275
8RXH|1|L1|U|1276
8RXH|1|L1|G|1277
*
8RXH|1|L1|C|1352
8RXH|1|L1|A|1353
8RXH|1|L1|C|1354

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LN

Putative 60S ribosomal protein L10

Chain LR

60S ribosomal protein L18a

Chain LS

Putative 60S ribosomal protein L21