IL_8RXH_082
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GC*GUGUAGC
- Length
- 9 nucleotides
- Bulged bases
- 8RXH|1|L1|U|1443, 8RXH|1|L1|A|1444, 8RXH|1|L1|G|1445
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_082 not in the Motif Atlas
- Geometric match to IL_6JXM_001
- Geometric discrepancy: 0.2595
- The information below is about IL_6JXM_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8RXH|1|L1|G|1418
8RXH|1|L1|C|1419
*
8RXH|1|L1|G|1440
8RXH|1|L1|U|1441
8RXH|1|L1|G|1442
8RXH|1|L1|U|1443
8RXH|1|L1|A|1444
8RXH|1|L1|G|1445
8RXH|1|L1|C|1446
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain LC
- Putative ribosomal protein L1a
- Chain LP
- 60S ribosomal protein L18
- Chain LZ
- Putative 60S ribosomal protein L28
- Chain Lc
- Putative 60S ribosomal protein L7
- Chain Lf
- 60S ribosomal protein L32
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