IL_8RXH_086
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GGACGAAG*UGGAC
- Length
- 13 nucleotides
- Bulged bases
- 8RXH|1|L1|C|1480
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_086 not in the Motif Atlas
- Geometric match to IL_7RQB_047
- Geometric discrepancy: 0.0965
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
8RXH|1|L1|G|1477
8RXH|1|L1|G|1478
8RXH|1|L1|A|1479
8RXH|1|L1|C|1480
8RXH|1|L1|G|1481
8RXH|1|L1|A|1482
8RXH|1|L1|A|1483
8RXH|1|L1|G|1484
*
8RXH|1|L1|U|1505
8RXH|1|L1|G|1506
8RXH|1|L1|G|1507
8RXH|1|L1|A|1508
8RXH|1|L1|C|1509
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Putative ribosomal protein L1a
- Chain LW
- Putative 60S ribosomal protein L26
- Chain LZ
- Putative 60S ribosomal protein L28
- Chain Lf
- 60S ribosomal protein L32
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