IL_8RXH_089
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GGCGU(A2M)(OMG)C*GCGAA(A2M)C
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_089 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.248
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8RXH|1|L1|G|1534
8RXH|1|L1|G|1535
8RXH|1|L1|C|1536
8RXH|1|L1|G|1537
8RXH|1|L1|U|1538
8RXH|1|L1|A2M|1539
8RXH|1|L1|OMG|1540
8RXH|1|L1|C|1541
*
8RXH|1|L2|G|599
8RXH|1|L2|C|600
8RXH|1|L2|G|601
8RXH|1|L2|A|602
8RXH|1|L2|A|603
8RXH|1|L2|A2M|604
8RXH|1|L2|C|605
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain LC
- Putative ribosomal protein L1a
- Chain LT
- Putative 60S ribosomal protein L17
Coloring options: