IL_8RXH_095

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUGU*GACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_095 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2502

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8RXH|1|L1|G|1677
8RXH|1|L1|U|1678
8RXH|1|L1|G|1679
8RXH|1|L1|U|1680
*
8RXH|1|L1|G|1712
8RXH|1|L1|A|1713
8RXH|1|L1|C|1714
8RXH|1|L1|U|1715

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain L3

SR1_chain_3