IL_8RXH_108

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGCA*UGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGCA,UGCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_108 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1604

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8RXH|1|L2|G|132
8RXH|1|L2|G|133
8RXH|1|L2|C|134
8RXH|1|L2|A|135
*
8RXH|1|L2|U|343
8RXH|1|L2|G|344
8RXH|1|L2|C|345
8RXH|1|L2|C|346

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain L3

SR1_chain_3

Chain LQ

Putative 60S ribosomal protein L19

Chain LU

Putative 60S ribosomal protein L22

Chain SK

40S ribosomal protein S8