IL_8RXH_110
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UGAUGC*GUAUAUCG
- Length
- 14 nucleotides
- Bulged bases
- 8RXH|1|L2|U|405, 8RXH|1|L2|A|421, 8RXH|1|L2|C|425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_110 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1803
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|L2|U|402
8RXH|1|L2|G|403
8RXH|1|L2|A|404
8RXH|1|L2|U|405
8RXH|1|L2|G|406
8RXH|1|L2|C|407
*
8RXH|1|L2|G|419
8RXH|1|L2|U|420
8RXH|1|L2|A|421
8RXH|1|L2|U|422
8RXH|1|L2|A|423
8RXH|1|L2|U|424
8RXH|1|L2|C|425
8RXH|1|L2|G|426
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L3
- SR1_chain_3
- Chain LA
- Putative 60S ribosomal protein L2
- Chain Lo
- 60S ribosomal protein L37a
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
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