IL_8RXH_116
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UCAACG*CCGACG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_116 not in the Motif Atlas
- Geometric match to IL_4V9F_057
- Geometric discrepancy: 0.3183
- The information below is about IL_4V9F_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34822.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|L2|U|457
8RXH|1|L2|C|458
8RXH|1|L2|A|459
8RXH|1|L2|A|460
8RXH|1|L2|C|461
8RXH|1|L2|G|462
*
8RXH|1|L2|C|475
8RXH|1|L2|C|476
8RXH|1|L2|G|477
8RXH|1|L2|A|478
8RXH|1|L2|C|479
8RXH|1|L2|G|480
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- Putative 60S ribosomal protein L2
- Chain Li
- Putative 60S Ribosomal protein L36
- Chain S4
- Transfer RNA; tRNA
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