IL_8RXH_122

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_122 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.1131

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RXH|1|L2|G|637
8RXH|1|L2|C|638
8RXH|1|L2|G|639
8RXH|1|L2|G|640
*
8RXH|1|L2|U|1424
8RXH|1|L2|A|1425
8RXH|1|L2|C|1426

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain L5

SR4_chain_5

Chain LB

Putative ribosomal protein L3

Chain LH

Putative 60S ribosomal protein L13a