IL_8RXH_129

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UGCG*UUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_129 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.211

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8RXH|1|L2|U|682
8RXH|1|L2|G|683
8RXH|1|L2|C|684
8RXH|1|L2|G|685
*
8RXH|1|L2|U|754
8RXH|1|L2|U|755
8RXH|1|L2|C|756
8RXH|1|L2|A|757

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LM

Ribosomal protein L15

Chain SA

40S ribosomal protein S3a