IL_8RXH_168
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GCAG*CAUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_168 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2335
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8RXH|1|L3|G|153
8RXH|1|L3|C|154
8RXH|1|L3|A|155
8RXH|1|L3|G|156
*
8RXH|1|L3|C|174
8RXH|1|L3|A|175
8RXH|1|L3|U|176
8RXH|1|L3|U|177
Current chains
- Chain L3
- SR1_chain_3
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Putative 60S ribosomal protein L19
- Chain LU
- Putative 60S ribosomal protein L22
- Chain Lh
- Putative 60S ribosomal protein L34
- Chain Lk
- Putative ribosomal protein L38
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