IL_8RXH_175
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CCUCU*AUCG
- Length
- 9 nucleotides
- Bulged bases
- 8RXH|1|L4|U|120, 8RXH|1|L4|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_175 not in the Motif Atlas
- Geometric match to IL_7RQB_104
- Geometric discrepancy: 0.1279
- The information below is about IL_7RQB_104
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.6
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
8RXH|1|L4|C|75
8RXH|1|L4|C|76
8RXH|1|L4|U|77
8RXH|1|L4|C|78
8RXH|1|L4|U|79
*
8RXH|1|L4|A|119
8RXH|1|L4|U|120
8RXH|1|L4|C|121
8RXH|1|L4|G|122
Current chains
- Chain L4
- SR2_chain_4
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L5
- SR4_chain_5
- Chain LB
- Putative ribosomal protein L3
- Chain LJ
- Putative 60S ribosomal protein L23
- Chain LX
- Putative ribosomal protein L24
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