IL_8RXH_186
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UGGGG*CCGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_186 not in the Motif Atlas
- Geometric match to IL_8GLP_204
- Geometric discrepancy: 0.3869
- The information below is about IL_8GLP_204
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8RXH|1|L5|U|65
8RXH|1|L5|G|66
8RXH|1|L5|G|67
8RXH|1|L5|G|68
8RXH|1|L5|G|69
*
8RXH|1|L5|C|89
8RXH|1|L5|C|90
8RXH|1|L5|G|91
8RXH|1|L5|A|92
8RXH|1|L5|G|93
Current chains
- Chain L5
- SR4_chain_5
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Putative 60S ribosomal protein L19
- Chain LU
- Putative 60S ribosomal protein L22
- Chain SK
- 40S ribosomal protein S8
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