IL_8RXH_197
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GUUAGUAC*GGAACCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_197 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2646
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8RXH|1|L8|G|75
8RXH|1|L8|U|76
8RXH|1|L8|U|77
8RXH|1|L8|A|78
8RXH|1|L8|G|79
8RXH|1|L8|U|80
8RXH|1|L8|A|81
8RXH|1|L8|C|82
*
8RXH|1|L8|G|102
8RXH|1|L8|G|103
8RXH|1|L8|A|104
8RXH|1|L8|A|105
8RXH|1|L8|C|106
8RXH|1|L8|C|107
8RXH|1|L8|C|108
Current chains
- Chain L8
- 5S_rRNA_chain_8
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LN
- Putative 60S ribosomal protein L10
- Chain LO
- Putative 60S ribosomal protein L5
- Chain LR
- 60S ribosomal protein L18a
- Chain LS
- Putative 60S ribosomal protein L21
- Chain Lc
- Putative 60S ribosomal protein L7
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