IL_8RXH_202
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- U(OMC)AAG*CGAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8RXH|1|S1|A|516
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_202 not in the Motif Atlas
- Homologous match to IL_8C3A_394
- Geometric discrepancy: 0.1573
- The information below is about IL_8C3A_394
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_30569.1
- Basepair signature
- cWW-cWW-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|S1|U|37
8RXH|1|S1|OMC|38
8RXH|1|S1|A|39
8RXH|1|S1|A|40
8RXH|1|S1|G|41
*
8RXH|1|S1|C|514
8RXH|1|S1|G|515
8RXH|1|S1|A|516
8RXH|1|S1|A|517
8RXH|1|S1|A|518
8RXH|1|S1|A|519
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SD
- Putative 40S ribosomal protein S9
- Chain SE
- 40S ribosomal protein S4
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