IL_8RXH_207

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GACG*CAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_207 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3344

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8RXH|1|S1|G|107
8RXH|1|S1|A|108
8RXH|1|S1|C|109
8RXH|1|S1|G|110
*
8RXH|1|S1|C|346
8RXH|1|S1|A|347
8RXH|1|S1|A|348
8RXH|1|S1|C|349

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SK

40S ribosomal protein S8

Chain SU

Ribosomal protein S17 family protein