IL_8RXH_213

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CG*CCGUG

Length

7 nucleotides

Bulged bases

8RXH|1|S1|C|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_213 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.1379

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

8RXH|1|S1|C|239
8RXH|1|S1|G|240
*
8RXH|1|S1|C|307
8RXH|1|S1|C|308
8RXH|1|S1|G|309
8RXH|1|S1|U|310
8RXH|1|S1|G|311

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SK

40S ribosomal protein S8