IL_8RXH_221

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

C(PSU)U*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_221 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2754

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8RXH|1|S1|C|454
8RXH|1|S1|PSU|455
8RXH|1|S1|U|456
*
8RXH|1|S1|A|463
8RXH|1|S1|G|464
8RXH|1|S1|G|465

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain LJ

Putative 60S ribosomal protein L23

Chain SG

40S ribosomal protein S6