IL_8RXH_222

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_222 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.103

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8RXH|1|S1|C|486
8RXH|1|S1|C|487
8RXH|1|S1|A|488
8RXH|1|S1|A|489
8RXH|1|S1|U|490
*
8RXH|1|S1|A|508
8RXH|1|S1|G|509

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SD

Putative 40S ribosomal protein S9

Chain SE

40S ribosomal protein S4

Chain SZ

40S ribosomal protein S24