IL_8RXH_232
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GACUAAAGA*UAGAA(A2M)GC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_232 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2627
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|S1|G|852
8RXH|1|S1|A|853
8RXH|1|S1|C|854
8RXH|1|S1|U|855
8RXH|1|S1|A|856
8RXH|1|S1|A|857
8RXH|1|S1|A|858
8RXH|1|S1|G|859
8RXH|1|S1|A|860
*
8RXH|1|S1|U|892
8RXH|1|S1|A|893
8RXH|1|S1|G|894
8RXH|1|S1|A|895
8RXH|1|S1|A|896
8RXH|1|S1|A2M|897
8RXH|1|S1|G|898
8RXH|1|S1|C|899
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SD
- Putative 40S ribosomal protein S9
- Chain SE
- 40S ribosomal protein S4
- Chain SU
- Ribosomal protein S17 family protein
Coloring options: