IL_8RXH_243
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GUACU*AAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_243 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3888
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8RXH|1|S1|G|1132
8RXH|1|S1|U|1133
8RXH|1|S1|A|1134
8RXH|1|S1|C|1135
8RXH|1|S1|U|1136
*
8RXH|1|S1|A|1170
8RXH|1|S1|A|1171
8RXH|1|S1|G|1172
8RXH|1|S1|A|1173
8RXH|1|S1|C|1174
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain LA
- Putative 60S ribosomal protein L2
- Chain SA
- 40S ribosomal protein S3a
- Chain SO
- 40S ribosomal protein S14
- Chain Sb
- 40S ribosomal protein S26
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