IL_8RXH_245

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUCAG*CUUAGACC

Length

13 nucleotides

Bulged bases

8RXH|1|S1|A|1160

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_245 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1301

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8RXH|1|S1|G|1142
8RXH|1|S1|U|1143
8RXH|1|S1|C|1144
8RXH|1|S1|A|1145
8RXH|1|S1|G|1146
*
8RXH|1|S1|C|1157
8RXH|1|S1|U|1158
8RXH|1|S1|U|1159
8RXH|1|S1|A|1160
8RXH|1|S1|G|1161
8RXH|1|S1|A|1162
8RXH|1|S1|C|1163
8RXH|1|S1|C|1164

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain SA

40S ribosomal protein S3a

Chain SO

40S ribosomal protein S14