IL_8RXH_253

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_253 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1093

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8RXH|1|S1|G|1463
8RXH|1|S1|G|1464
8RXH|1|S1|A|1465
8RXH|1|S1|G|1466
8RXH|1|S1|U|1467
8RXH|1|S1|A|1468
8RXH|1|S1|C|1469
8RXH|1|S1|G|1470
*
8RXH|1|S1|U|1481
8RXH|1|S1|G|1482
8RXH|1|S1|A|1483
8RXH|1|S1|A|1484
8RXH|1|S1|A|1485
8RXH|1|S1|C|1486

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain SP

Putative 40S ribosomal protein S23