IL_8RXH_257
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8RXH|1|S1|C|1510, 8RXH|1|S1|C|1511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_257 not in the Motif Atlas
- Geometric match to IL_1KOG_007
- Geometric discrepancy: 0.1594
- The information below is about IL_1KOG_007
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
8RXH|1|S1|A|1509
8RXH|1|S1|C|1510
8RXH|1|S1|C|1511
8RXH|1|S1|A|1512
*
8RXH|1|S1|U|2037
8RXH|1|S1|C|2038
8RXH|1|S1|C|2039
8RXH|1|S1|C|2040
8RXH|1|S1|U|2041
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain S3
- Transfer RNA; tRNA
- Chain S4
- Transfer RNA; tRNA
- Chain SH
- 40S ribosomal protein S5
- Chain SL
- Putative 40S ribosomal protein S16
- Chain Sd
- Putative 40S ribosomal protein S33
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