IL_8RXH_259

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_259 not in the Motif Atlas

Homologous match to IL_8C3A_451

Geometric discrepancy: 0.1118

The information below is about IL_8C3A_451

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

8RXH|1|S1|G|1530
8RXH|1|S1|G|1531
*
8RXH|1|S1|C|1860
8RXH|1|S1|A|1861
8RXH|1|S1|C|1862

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain S3

Transfer RNA; tRNA

Chain SR

Putative 40S ribosomal protein S18

Chain SW

Putative 40S ribosomal protein S15

Chain Sa

40S ribosomal protein S25