IL_8RXH_265
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- G(OMG)UGCAU*AUGCU
- Length
- 12 nucleotides
- Bulged bases
- 8RXH|1|S1|U|1624, 8RXH|1|S1|C|1626
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_265 not in the Motif Atlas
- Geometric match to IL_4V88_422
- Geometric discrepancy: 0.355
- The information below is about IL_4V88_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8RXH|1|S1|G|1622
8RXH|1|S1|OMG|1623
8RXH|1|S1|U|1624
8RXH|1|S1|G|1625
8RXH|1|S1|C|1626
8RXH|1|S1|A|1627
8RXH|1|S1|U|1628
*
8RXH|1|S1|A|1837
8RXH|1|S1|U|1838
8RXH|1|S1|G|1839
8RXH|1|S1|C|1840
8RXH|1|S1|U|1841
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain S2
- Transfer RNA; tRNA
- Chain S5
- mRNA_chain_S5
- Chain SC
- Putative 40S ribosomal protein S3
- Chain SM
- Putative ribosomal protein S20
- Chain SN
- Putative 40S ribosomal protein S10
- Chain SS
- Putative ribosomal protein S29
- Chain Se
- 40S ribosomal protein S30
- Chain Sf
- Ubiquitin-60S ribosomal protein L40
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