IL_8RXH_281

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GAGGA*UGGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_281 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2281

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8RXH|1|S1|G|1965
8RXH|1|S1|A|1966
8RXH|1|S1|G|1967
8RXH|1|S1|G|1968
8RXH|1|S1|A|1969
*
8RXH|1|S1|U|1980
8RXH|1|S1|G|1981
8RXH|1|S1|G|1982
8RXH|1|S1|U|1983
8RXH|1|S1|C|1984

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SR

Putative 40S ribosomal protein S18

Chain SW

Putative 40S ribosomal protein S15

Chain SX

40S ribosomal protein S19-like protein