IL_8RXH_287

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_287 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.0865

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8RXH|1|S1|C|2073
8RXH|1|S1|G|2074
8RXH|1|S1|A|2075
8RXH|1|S1|U|2076
*
8RXH|1|S1|A|2147
8RXH|1|S1|G|2148
8RXH|1|S1|A|2149
8RXH|1|S1|G|2150

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Putative 60S ribosomal protein L23

Chain Ln

60S ribosomal protein L41