IL_8RXH_289

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUGCA*UU(OMC)UU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_289 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2686

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8RXH|1|S1|G|2081
8RXH|1|S1|U|2082
8RXH|1|S1|G|2083
8RXH|1|S1|C|2084
8RXH|1|S1|A|2085
*
8RXH|1|S1|U|2138
8RXH|1|S1|U|2139
8RXH|1|S1|OMC|2140
8RXH|1|S1|U|2141
8RXH|1|S1|U|2142

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Putative 60S ribosomal protein L23

Chain SK

40S ribosomal protein S8