IL_8RXH_292

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_292 not in the Motif Atlas

Geometric match to IL_4LFB_004

Geometric discrepancy: 0.1951

The information below is about IL_4LFB_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8RXH|1|S1|C|2089
8RXH|1|S1|A|2090
8RXH|1|S1|G|2091
*
8RXH|1|S1|C|2132
8RXH|1|S1|G|2133

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain LX

Putative ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SK

40S ribosomal protein S8