IL_8RXH_294

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGGAC*GAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_294 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1848

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8RXH|1|S1|C|2097
8RXH|1|S1|G|2098
8RXH|1|S1|G|2099
8RXH|1|S1|A|2100
8RXH|1|S1|C|2101
*
8RXH|1|S1|G|2122
8RXH|1|S1|A|2123
8RXH|1|S1|A|2124
8RXH|1|S1|A|2125
8RXH|1|S1|G|2126

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain LX

Putative ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SK

40S ribosomal protein S8