IL_8RXH_304

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUCGG*UGUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_304 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.304

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8RXH|1|L1|G|1681
8RXH|1|L1|U|1682
8RXH|1|L1|C|1683
8RXH|1|L1|G|1684
8RXH|1|L1|G|1685
*
8RXH|1|L1|U|1707
8RXH|1|L1|G|1708
8RXH|1|L1|U|1709
8RXH|1|L1|U|1710
8RXH|1|L1|C|1711

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain L3

SR1_chain_3

Chain LY

60S ribosomal protein L27