IL_8RXH_305
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AUGU*AACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_305 not in the Motif Atlas
- Geometric match to IL_8C3A_437
- Geometric discrepancy: 0.197
- The information below is about IL_8C3A_437
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8RXH|1|L1|A|1774
8RXH|1|L1|U|1775
8RXH|1|L1|G|1776
8RXH|1|L1|U|1777
*
8RXH|1|L2|A|5
8RXH|1|L2|A|6
8RXH|1|L2|C|7
8RXH|1|L2|U|8
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L3
- SR1_chain_3
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Lk
- Putative ribosomal protein L38
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