IL_8RXH_310
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8RXH|1|L2|A2M|527, 8RXH|1|L2|C|533, 8RXH|1|L2|C|552
- QA status
- Modified nucleotides: 5MC, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_310 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.2563
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8RXH|1|L2|C|523
8RXH|1|L2|5MC|524
8RXH|1|L2|A|525
8RXH|1|L2|A|526
8RXH|1|L2|A2M|527
8RXH|1|L2|U|528
8RXH|1|L2|G|529
8RXH|1|L2|C|530
8RXH|1|L2|C|531
8RXH|1|L2|U|532
8RXH|1|L2|C|533
8RXH|1|L2|OMG|534
*
8RXH|1|L2|C|550
8RXH|1|L2|G|551
8RXH|1|L2|C|552
8RXH|1|L2|G|553
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain S2
- Transfer RNA; tRNA
Coloring options: