IL_8RXH_322

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UUGC*GC(A2M)

Length

7 nucleotides

Bulged bases

8RXH|1|S1|U|483

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_322 not in the Motif Atlas

Geometric match to IL_3R1C_011

Geometric discrepancy: 0.1638

The information below is about IL_3R1C_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8RXH|1|S1|U|482
8RXH|1|S1|U|483
8RXH|1|S1|G|484
8RXH|1|S1|C|485
*
8RXH|1|S1|G|510
8RXH|1|S1|C|511
8RXH|1|S1|A2M|512

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SD

Putative 40S ribosomal protein S9

Chain SE

40S ribosomal protein S4

Chain SZ

40S ribosomal protein S24